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Journal Articles

Interstitial macrophages are a focus of viral takeover and inflammation in COVID-19 initiation in human lung

Timothy Ting-Hsuan Wu, Kyle J. Travaglini, Arjun Rustagi, Duo Xu, Yue Zhang, Leonid Andronov, SoRi Jang, Astrid Gillich, Roozbeh Dehghannasiri, Giovanny J. Martínez-Colón, Aimee Beck, Daniel Dan Liu, Aaron J. Wilk, Maurizio Morri, Winston L. Trope, Rob Bierman, Irving L. Weissman, Joseph B. Shrager, Stephen R. Quake, Christin S. Kuo, Julia Salzman, W.E. Moerner, Peter S. Kim, Catherine A. Blish, Mark A. Krasnow
Journal: Journal of Experimental Medicine
J Exp Med (2024) 221 (6): e20232192.
https://doi.org/10.1084/jem.20232192
Published: 10 April 2024
View article titled, Interstitial macrophages are a focus of viral takeover and inflammation in COVID-19 initiation in human lung
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Includes: Supplementary data
Journal Articles

Higher COVID-19 pneumonia risk associated with anti-IFN-α than with anti-IFN-ω auto-Abs in children

In Special Collection:
Innate Immune Signaling: From Host Defense to Disease Pathogenesis
Paul Bastard, Adrian Gervais, Maki Taniguchi, Liisa Saare, Karita Särekannu, Tom Le Voyer, Quentin Philippot, Jérémie Rosain, Lucy Bizien, Takaki Asano, Marina Garcia-Prat, Alba Parra-Martínez, Mélanie Migaud, Miyuki Tsumura, Francesca Conti, Alexandre Belot, Jacques G. Rivière, Tomohiro Morio, Junko Tanaka, Etienne Javouhey, Filomeen Haerynck, Sotirija Duvlis, Tayfun Ozcelik, Sevgi Keles, Yacine Tandjaoui-Lambiotte, Simon Escoda, Maya Husain, Qiang Pan-Hammarström, Lennart Hammarström, Gloria Ahlijah, Anthony Abi Haidar, Camille Soudee, Vincent Arseguel, Hassan Abolhassani, Sabina Sahanic, Ivan Tancevski, Yoko Nukui, Seiichi Hayakawa, George P. Chrousos, Athanasios Michos, Elizabeth-Barbara Tatsi, Filippos Filippatos, Agusti Rodriguez-Palmero, Jesus Troya, Imran Tipu, Isabelle Meyts, Lucie Roussel, Sisse Rye Ostrowski, Laire Schidlowski, Carolina Prando, Antonio Condino-Neto, Nathalie Cheikh, Ahmed A. Bousfiha, Jalila El Bakkouri, COVID Clinicians, GEN-COVID Study Group, COVID Human Genetic Effort, Pärt Peterson, Aurora Pujol, Romain Lévy, Pierre Quartier, Donald C. Vinh, Bertrand Boisson, Vivien Béziat, Shen-Ying Zhang, Alessandro Borghesi, Andrea Pession, Evangelos Andreakos, Nico Marr, Alexios-Fotios A. Mentis, Trine H. Mogensen, Carlos Rodríguez-Gallego, Pere Soler-Palacin, Roger Colobran, Vallo Tillmann, Bénédicte Neven, Sophie Trouillet-Assant, Petter Brodin, Laurent Abel, Emmanuelle Jouanguy, Qian Zhang, Federico Martinón-Torres, Antonio Salas, Alberto Gómez-Carballa, Luis I. Gonzalez-Granado, Kai Kisand, Satoshi Okada, Anne Puel, Aurélie Cobat, Jean-Laurent Casanova
Journal: Journal of Experimental Medicine
J Exp Med (2024) 221 (2): e20231353.
https://doi.org/10.1084/jem.20231353
Published: 04 January 2024
View article titled, Higher COVID-19 pneumonia risk associated with anti-IFN-α than with anti-IFN-ω auto-Abs in children
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Journal Articles

Memory B cell development elicited by mRNA booster vaccinations in the elderly

Zijun Wang, Frauke Muecksch, Raphael Raspe, Frederik Johannsen, Martina Turroja, Marie Canis, Mohamed A. ElTanbouly, Gabriela S. Silva Santos, Brianna Johnson, Viren A. Baharani, Rachel Patejak, Kai-Hui Yao, Bennett J. Chirco, Katrina G. Millard, Irina Shimeliovich, Anna Gazumyan, Thiago Y. Oliveira, Paul D. Bieniasz, Theodora Hatziioannou, Marina Caskey, Michel C. Nussenzweig
Journal: Journal of Experimental Medicine
J Exp Med (2023) 220 (9): e20230668.
https://doi.org/10.1084/jem.20230668
Published: 27 June 2023
View article titled, Memory B cell development elicited by mRNA booster vaccinations in the elderly
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Includes: Supplementary data
Journal Articles

SARS-CoV-2 infection and recovery in children: Distinct T cell responses in MIS-C compared to COVID-19

In Special Collection:
Journal-Based CME Activities with Journal of Experimental Medicine (JEM)
Ksenia Rybkina, Joseph N. Bell, Marissa C. Bradley, Teddy Wohlbold, Marika Scafuro, Wenzhao Meng, Rebecca C. Korenberg, Julia Davis-Porada, Brett R. Anderson, Rachel J. Weller, Joshua D. Milner, Anne Moscona, Matteo Porotto, Eline T. Luning Prak, Kalpana Pethe, Thomas J. Connors, Donna L. Farber
Journal: Journal of Experimental Medicine
J Exp Med (2023) 220 (8): e20221518.
https://doi.org/10.1084/jem.20221518
Published: 03 May 2023
View article titled, SARS-CoV-2 infection and recovery in children: Distinct T cell responses in MIS-C compared to COVID-19
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Includes: Supplementary data
Journal Articles

Humans with inherited MyD88 and IRAK-4 deficiencies are predisposed to hypoxemic COVID-19 pneumonia

Ana García-García, Rebeca Pérez de Diego, Carlos Flores, Darawan Rinchai, Jordi Solé-Violán, Àngela Deyà-Martínez, Blanca García-Solis, José M. Lorenzo-Salazar, Elisa Hernández-Brito, Anna-Lisa Lanz, Leen Moens, Giorgia Bucciol, Mohamed Almuqamam, Joseph B. Domachowske, Elena Colino, Juan Luis Santos-Perez, Francisco M. Marco, Claudio Pignata, Aziz Bousfiha, Stuart E. Turvey, Stefanie Bauer, Filomeen Haerynck, Javier Gonzalo Ocejo-Vinyals, Francisco Lendinez, Seraina Prader, Nora Naumann-Bartsch, Jana Pachlopnik Schmid, Catherine M. Biggs, Kyla Hildebrand, Alexandra Dreesman, Miguel Ángel Cárdenes, Fatima Ailal, Ibtihal Benhsaien, Giuliana Giardino, Agueda Molina-Fuentes, Claudia Fortuny, Swetha Madhavarapu, Daniel H. Conway, Carolina Prando, Laire Schidlowski, María Teresa Martínez de Saavedra Álvarez, Rafael Alfaro, Felipe Rodríguez de Castro, ESID Registry Working Party, COVID Human Genetic Effort, Isabelle Meyts, Fabian Hauck, Anne Puel, Paul Bastard, Bertrand Boisson, Emmanuelle Jouanguy, Laurent Abel, Aurélie Cobat, Qian Zhang, Jean-Laurent Casanova, Laia Alsina, Carlos Rodríguez-Gallego
Journal: Journal of Experimental Medicine
J Exp Med (2023) 220 (5): e20220170.
https://doi.org/10.1084/jem.20220170
Published: 03 March 2023
View article titled, Humans with inherited MyD88 and IRAK-4 deficiencies are predisposed to hypoxemic COVID-19 pneumonia
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Includes: Supplementary data
Journal Articles

Antibody feedback contributes to facilitating the development of Omicron-reactive memory B cells in SARS-CoV-2 mRNA vaccinees

In Special Collection:
B cells, Infectious Diseases, and Autoimmunity
Takeshi Inoue, Ryo Shinnakasu, Chie Kawai, Hiromi Yamamoto, Shuhei Sakakibara, Chikako Ono, Yumi Itoh, Tommy Terooatea, Kazuo Yamashita, Toru Okamoto, Noritaka Hashii, Akiko Ishii-Watabe, Noah S. Butler, Yoshiharu Matsuura, Hisatake Matsumoto, Shinya Otsuka, Kei Hiraoka, Takanori Teshima, Masaaki Murakami, Tomohiro Kurosaki
Journal: Journal of Experimental Medicine
J Exp Med (2022) 220 (2): e20221786.
https://doi.org/10.1084/jem.20221786
Published: 13 December 2022
View article titled, Antibody feedback contributes to facilitating the development of Omicron-reactive memory B cells in SARS-CoV-2 mRNA vaccinees
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Includes: Supplementary data
Journal Articles

SARS-CoV-2 Spike protein suppresses CTL-mediated killing by inhibiting immune synapse assembly

In Special Collection:
JEM Immunology Collection 2023
Anna Onnis, Emanuele Andreano, Chiara Cassioli, Francesca Finetti, Chiara Della Bella, Oskar Staufer, Elisa Pantano, Valentina Abbiento, Giuseppe Marotta, Mario Milco D’Elios, Rino Rappuoli, Cosima T. Baldari
Journal: Journal of Experimental Medicine
J Exp Med (2022) 220 (2): e20220906.
https://doi.org/10.1084/jem.20220906
Published: 15 November 2022
View article titled, SARS-CoV-2 Spike protein suppresses CTL-mediated killing by inhibiting immune synapse assembly
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Includes: Supplementary data
Journal Articles

Human type I IFN deficiency does not impair B cell response to SARS-CoV-2 mRNA vaccination

In Special Collection:
B Cell Biology in Health and Diseases
Aurélien Sokal, Paul Bastard, Pascal Chappert, Giovanna Barba-Spaeth, Slim Fourati, Alexis Vanderberghe, Pauline Lagouge-Roussey, Isabelle Meyts, Adrian Gervais, Magali Bouvier-Alias, Imane Azzaoui, Ignacio Fernández, Andréa de la Selle, Qian Zhang, Lucy Bizien, Isabelle Pellier, Agnès Linglart, Anya Rothenbuhler, Estelle Marcoux, Raphael Anxionnat, Nathalie Cheikh, Juliane Léger, Blanca Amador-Borrero, Fanny Fouyssac, Vanessa Menut, Jean-Christophe Goffard, Caroline Storey, Caroline Demily, Coralie Mallebranche, Jesus Troya, Aurora Pujol, Marie Zins, Pierre Tiberghien, Paul E. Gray, Peter McNaughton, Anna Sullivan, Jane Peake, Romain Levy, Laetitia Languille, Carlos Rodiguez-Gallego, Bertrand Boisson, Sébastien Gallien, Bénédicte Neven, Marc Michel, Bertrand Godeau, Laurent Abel, Felix A. Rey, Jean-Claude Weill, Claude-Agnès Reynaud, Stuart G. Tangye, Jean-Laurent Casanova, Matthieu Mahévas
Journal: Journal of Experimental Medicine
J Exp Med (2022) 220 (1): e20220258.
https://doi.org/10.1084/jem.20220258
Published: 07 November 2022
View article titled, Human type I IFN deficiency does not impair B cell response to SARS-CoV-2 mRNA vaccination
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Includes: Supplementary data
Journal Articles

Memory B cell responses to Omicron subvariants after SARS-CoV-2 mRNA breakthrough infection in humans

Zijun Wang, Pengcheng Zhou, Frauke Muecksch, Alice Cho, Tarek Ben Tanfous, Marie Canis, Leander Witte, Brianna Johnson, Raphael Raspe, Fabian Schmidt, Eva Bednarski, Justin Da Silva, Victor Ramos, Shuai Zong, Martina Turroja, Katrina G. Millard, Kai-Hui Yao, Irina Shimeliovich, Juan Dizon, Anna Kaczynska, Mila Jankovic, Anna Gazumyan, Thiago Y. Oliveira, Marina Caskey, Christian Gaebler, Paul D. Bieniasz, Theodora Hatziioannou, Michel C. Nussenzweig
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (12): e20221006.
https://doi.org/10.1084/jem.20221006
Published: 23 September 2022
View article titled, Memory B cell responses to Omicron subvariants after SARS-CoV-2 mRNA breakthrough infection in humans
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Includes: Supplementary data
Journal Articles

Impaired immune response drives age-dependent severity of COVID-19

Julius Beer, Stefania Crotta, Angele Breithaupt, Annette Ohnemus, Jan Becker, Benedikt Sachs, Lisa Kern, Miriam Llorian, Nadine Ebert, Fabien Labroussaa, Tran Thi Nhu Thao, Bettina Salome Trueeb, Joerg Jores, Volker Thiel, Martin Beer, Jonas Fuchs, Georg Kochs, Andreas Wack, Martin Schwemmle, Daniel Schnepf
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (12): e20220621.
https://doi.org/10.1084/jem.20220621
Published: 21 September 2022
View article titled, Impaired immune response drives age-dependent severity of COVID-19
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Includes: Supplementary data
Journal Articles

Humoral immunity to SARS-CoV-2 elicited by combination COVID-19 vaccination regimens

Zijun Wang, Frauke Muecksch, Friederike Muenn, Alice Cho, Shuai Zong, Raphael Raspe, Victor Ramos, Brianna Johnson, Tarek Ben Tanfous, Justin DaSilva, Eva Bednarski, Camila Guzman-Cardozo, Martina Turroja, Katrina G. Millard, Pinkus Tober-Lau, David Hillus, Kai-Hui Yao, Irina Shimeliovich, Juan Dizon, Anna Kaczynska, Mila Jankovic, Anna Gazumyan, Thiago Y. Oliveira, Marina Caskey, Paul D. Bieniasz, Theodora Hatziioannou, Florian Kurth, Leif Erik Sander, Michel C. Nussenzweig, Christian Gaebler
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (10): e20220826.
https://doi.org/10.1084/jem.20220826
Published: 25 August 2022
View article titled, Humoral immunity to SARS-CoV-2 elicited by combination COVID-19 vaccination regimens
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Includes: Supplementary data
Journal Articles

SARS-CoV-2 breakthrough infection in vaccinees induces virus-specific nasal-resident CD8+ and CD4+ T cells of broad specificity

In Special Collection:
JEM Clinical Immunology Collection 2023
Joey Ming Er Lim, Anthony Tanoto Tan, Nina Le Bert, Shou Kit Hang, Jenny Guek Hong Low, Antonio Bertoletti
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (10): e20220780.
https://doi.org/10.1084/jem.20220780
Published: 16 August 2022
View article titled, SARS-CoV-2 breakthrough infection in vaccinees induces virus-specific nasal-resident CD8<sup>+</sup> and CD4<sup>+</sup> T cells of broad specificity
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Journal Articles

IgM antibodies derived from memory B cells are potent cross-variant neutralizers of SARS-CoV-2

Malika Hale, Jason Netland, Yu Chen, Christopher D. Thouvenel, Katherine Nabel Smith, Lucille M. Rich, Elizabeth R. Vanderwall, Marcos C. Miranda, Julie Eggenberger, Linhui Hao, Michael J. Watson, Charles C. Mundorff, Lauren B. Rodda, Neil P. King, Miklos Guttman, Michael Gale, Jr, Jonathan Abraham, Jason S. Debley, Marion Pepper, David J. Rawlings
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (9): e20220849.
https://doi.org/10.1084/jem.20220849
Published: 08 August 2022
View article titled, IgM antibodies derived from memory B cells are potent cross-variant neutralizers of SARS-CoV-2
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Includes: Supplementary data
Journal Articles

Plasma and memory antibody responses to Gamma SARS-CoV-2 provide limited cross-protection to other variants

Marianna Agudelo, Frauke Muecksch, Dennis Schaefer-Babajew, Alice Cho, Justin DaSilva, Eva Bednarski, Victor Ramos, Thiago Y. Oliveira, Melissa Cipolla, Anna Gazumyan, Shuai Zong, Danielle A.S. Rodrigues, Guilherme S. Lira, Luciana Conde, Renato Santana Aguiar, Orlando C. Ferreira, Jr., Amilcar Tanuri, Katia C. Affonso, Rafael M. Galliez, Terezinha Marta Pereira Pinto Castineiras, Juliana Echevarria-Lima, Marcelo Torres Bozza, Andre M. Vale, Paul D. Bieniasz, Theodora Hatziioannou, Michel C. Nussenzweig
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (9): e20220367.
https://doi.org/10.1084/jem.20220367
Published: 07 July 2022
View article titled, Plasma and memory antibody responses to Gamma SARS-CoV-2 provide limited cross-protection to other variants
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Includes: Supplementary data
Journal Articles

Antibody evolution to SARS-CoV-2 after single-dose Ad26.COV2.S vaccine in humans

Alice Cho, Frauke Muecksch, Zijun Wang, Tarek Ben Tanfous, Justin DaSilva, Raphael Raspe, Brianna Johnson, Eva Bednarski, Victor Ramos, Dennis Schaefer-Babajew, Irina Shimeliovich, Juan P. Dizon, Kai-Hui Yao, Fabian Schmidt, Katrina G. Millard, Martina Turroja, Mila Jankovic, Thiago Y. Oliveira, Anna Gazumyan, Christian Gaebler, Marina Caskey, Theodora Hatziioannou, Paul D. Bieniasz, Michel C. Nussenzweig
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (8): e20220732.
https://doi.org/10.1084/jem.20220732
Published: 01 July 2022
View article titled, Antibody evolution to SARS-CoV-2 after single-dose Ad26.COV2.S vaccine in humans
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Includes: Supplementary data
Journal Articles

Recessive inborn errors of type I IFN immunity in children with COVID-19 pneumonia

In Special Collection:
Cytokines Collection 2022
Qian Zhang, Daniela Matuozzo, Jérémie Le Pen, Danyel Lee, Leen Moens, Takaki Asano, Jonathan Bohlen, Zhiyong Liu, Marcela Moncada-Velez, Yasemin Kendir-Demirkol, Huie Jing, Lucy Bizien, Astrid Marchal, Hassan Abolhassani, Selket Delafontaine, Giorgia Bucciol, COVID Human Genetic Effort, Gulsum Ical Bayhan, Sevgi Keles, Ayca Kiykim, Selda Hancerli, Filomeen Haerynck, Benoit Florkin, Nevin Hatipoglu, Tayfun Ozcelik, Guillaume Morelle, Mayana Zatz, Lisa F.P. Ng, David Chien Lye, Barnaby Edward Young, Yee-Sin Leo, Clifton L. Dalgard, Richard P. Lifton, Laurent Renia, Isabelle Meyts, Emmanuelle Jouanguy, Lennart Hammarström, Qiang Pan-Hammarström, Bertrand Boisson, Paul Bastard, Helen C. Su, Stéphanie Boisson-Dupuis, Laurent Abel, Charles M. Rice, Shen-Ying Zhang, Aurélie Cobat, Jean-Laurent Casanova
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (8): e20220131.
https://doi.org/10.1084/jem.20220131
Published: 16 June 2022
View article titled, Recessive inborn errors of type I IFN immunity in children with COVID-19 pneumonia
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Journal Articles

Potent human broadly SARS-CoV-2–neutralizing IgA and IgG antibodies effective against Omicron BA.1 and BA.2

In Special Collection:
JEM Mucosal Immunology 2022
Cyril Planchais, Ignacio Fernández, Timothée Bruel, Guilherme Dias de Melo, Matthieu Prot, Maxime Beretta, Pablo Guardado-Calvo, Jérémy Dufloo, Luis M. Molinos-Albert, Marija Backovic, Jeanne Chiaravalli, Emilie Giraud, Benjamin Vesin, Laurine Conquet, Ludivine Grzelak, Delphine Planas, Isabelle Staropoli, Florence Guivel-Benhassine, Thierry Hieu, Mikaël Boullé, Minerva Cervantes-Gonzalez, Marie-Noëlle Ungeheuer, Pierre Charneau, Sylvie van der Werf, Fabrice Agou, French COVID Cohort Study Group, CORSER Study Group, Jordan D. Dimitrov, Etienne Simon-Lorière, Hervé Bourhy, Xavier Montagutelli, Félix A. Rey, Olivier Schwartz, Hugo Mouquet
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (7): e20220638.
https://doi.org/10.1084/jem.20220638
Published: 15 June 2022
View article titled, Potent human broadly SARS-CoV-2–neutralizing IgA and IgG antibodies effective against Omicron BA.1 and BA.2
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Includes: Supplementary data
Journal Articles

SARS-CoV-2 infection relaxes peripheral B cell tolerance

In Special Collection:
JEM Clinical Immunology Collection 2022
Moriah J. Castleman, Megan M. Stumpf, Nicholas R. Therrien, Mia J. Smith, Kelsey E. Lesteberg, Brent E. Palmer, James P. Maloney, William J. Janssen, Kara J. Mould, J. David Beckham, Roberta Pelanda, Raul M. Torres
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (6): e20212553.
https://doi.org/10.1084/jem.20212553
Published: 14 April 2022
View article titled, SARS-CoV-2 infection relaxes peripheral B cell tolerance
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Includes: Supplementary data
Journal Articles

TIM3+ TRBV11-2 T cells and IFNγ signature in patrolling monocytes and CD16+ NK cells delineate MIS-C

Levi Hoste, Lisa Roels, Leslie Naesens, Victor Bosteels, Stijn Vanhee, Sam Dupont, Cedric Bosteels, Robin Browaeys, Niels Vandamme, Kevin Verstaen, Jana Roels, Karel F.A. Van Damme, Bastiaan Maes, Elisabeth De Leeuw, Jozefien Declercq, Helena Aegerter, Leen Seys, Ursula Smole, Sofie De Prijck, Manon Vanheerswynghels, Karlien Claes, Veronique Debacker, Gert Van Isterdael, Lynn Backers, Kathleen B.M. Claes, Paul Bastard, Emmanuelle Jouanguy, Shen-Ying Zhang, Gilles Mets, Joke Dehoorne, Kristof Vandekerckhove, Petra Schelstraete, Jef Willems, MIS-C Clinicians, Patrick Stordeur, Sophie Janssens, Rudi Beyaert, Yvan Saeys, Jean-Laurent Casanova, Bart N. Lambrecht, Filomeen Haerynck, Simon J. Tavernier
Journal: Journal of Experimental Medicine
J Exp Med (2021) 219 (2): e20211381.
https://doi.org/10.1084/jem.20211381
Published: 16 December 2021
View article titled, TIM3<sup>+</sup><em> TRBV11-2</em> T cells and IFNγ signature in patrolling monocytes and CD16<sup>+</sup> NK cells delineate MIS-C
Open the PDF for TIM3<sup>+</sup><em> TRBV11-2</em> T cells and IFNγ signature in patrolling monocytes and CD16<sup>+</sup> NK cells delineate MIS-C in another window
Includes: Supplementary data
Journal Articles

Intravenous administration of BCG protects mice against lethal SARS-CoV-2 challenge

Kerry L. Hilligan, Sivaranjani Namasivayam, Chad S. Clancy, Danielle O’Mard, Sandra D. Oland, Shelly J. Robertson, Paul J. Baker, Ehydel Castro, Nicole L. Garza, Bernard A.P. Lafont, Reed Johnson, Franca Ronchese, Katrin D. Mayer-Barber, Sonja M. Best, Alan Sher
Journal: Journal of Experimental Medicine
J Exp Med (2021) 219 (2): e20211862.
https://doi.org/10.1084/jem.20211862
Published: 10 December 2021
View article titled, Intravenous administration of BCG protects mice against lethal SARS-CoV-2 challenge
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Includes: Supplementary data