The establishment of long-lasting immunity against pathogens is facilitated by the germinal center (GC) reaction, during which B cells increase their antibody affinity and differentiate into antibody-secreting cells (ASC) and memory cells. These events involve modifications in chromatin packaging that orchestrate the profound restructuring of gene expression networks that determine cell fate. While several chromatin remodelers were implicated in lymphocyte functions, less is known about SMARCA5. Here, using ribosomal pull-down for analyzing translated genes in GC B cells, coupled with functional experiments in mice, we identified SMARCA5 as a key chromatin remodeler in B cells. While the naive B cell compartment remained unaffected following conditional depletion of Smarca5, effective proliferation during B cell activation, immunoglobulin class switching, and as a result GC formation and ASC differentiation were impaired. Single-cell multiomic sequencing analyses revealed that SMARCA5 is crucial for facilitating the transcriptional modifications and genomic accessibility of genes that support B cell activation and differentiation. These findings offer novel insights into the functions of SMARCA5, which can be targeted in various human pathologies.
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September 19 2024
SMARCA5-mediated chromatin remodeling is required for germinal center formation
Liat Stoler-Barak
,
Liat Stoler-Barak
(Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Visualization, Writing - original draft, Writing - review & editing)
1Department of Systems Immunology,
Weizmann Institute of Science
, Rehovot, Israel
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Dominik Schmiedel
,
Dominik Schmiedel
(Investigation, Methodology, Writing - review & editing)
1Department of Systems Immunology,
Weizmann Institute of Science
, Rehovot, Israel
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Avital Sarusi-Portuguez
,
Avital Sarusi-Portuguez
(Formal analysis)
2
Mantoux Bioinformatics Institute of the Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science
, Rehovot, Israel
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Adi Rogel
,
Adi Rogel
(Investigation)
3Department of Chemical and Structural Biology,
Weizmann Institute of Science
, Rehovot, Israel
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Ronnie Blecher-Gonen
,
Ronnie Blecher-Gonen
(Investigation, Resources)
4
The Crown Genomics Institute of the Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science
, Rehovot, Israel
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Zhana Haimon
,
Zhana Haimon
(Methodology)
5Department of Immunology and Regenerative Biology,
Weizmann Institute of Science
, Rehovot, Israel
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Tomas Stopka
,
Tomas Stopka
(Investigation)
6BIOCEV, First Faculty of Medicine,
Charles University
, Vestec, Czech Republic
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Ziv Shulman
(Conceptualization, Data curation, Funding acquisition, Project administration, Resources, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing)
1Department of Systems Immunology,
Weizmann Institute of Science
, Rehovot, Israel
Correspondence to Ziv Shulman: [email protected]
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Liat Stoler-Barak
Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Visualization, Writing - original draft, Writing - review & editing
1Department of Systems Immunology,
Weizmann Institute of Science
, Rehovot, Israel
Dominik Schmiedel
Investigation, Methodology, Writing - review & editing
1Department of Systems Immunology,
Weizmann Institute of Science
, Rehovot, Israel
Avital Sarusi-Portuguez
Formal analysis
2
Mantoux Bioinformatics Institute of the Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science
, Rehovot, Israel
Adi Rogel
Investigation
3Department of Chemical and Structural Biology,
Weizmann Institute of Science
, Rehovot, Israel
Ronnie Blecher-Gonen
Investigation, Resources
4
The Crown Genomics Institute of the Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science
, Rehovot, Israel
Zhana Haimon
Methodology
5Department of Immunology and Regenerative Biology,
Weizmann Institute of Science
, Rehovot, Israel
Tomas Stopka
Investigation
6BIOCEV, First Faculty of Medicine,
Charles University
, Vestec, Czech Republic
Correspondence to Ziv Shulman: [email protected]
Disclosures: The authors declare no competing interests exist.
Received:
March 08 2024
Revision Received:
June 19 2024
Accepted:
August 15 2024
Online ISSN: 1540-9538
Print ISSN: 0022-1007
Funder(s):
European Research Council
- Award Id(s): 101001613
Funder(s):
Israel Science Foundation
- Award Id(s): 1272/23
Funder(s):
Morris Kahn Institute for Human Immunology
Funder(s):
European Molecular Biology Organization
Funder(s):
Grantová Agentura České Republiky
- Award Id(s): 24-10435S,24-10353S
Funder(s):
Programme EXCELES
- Award Id(s): LX22NPO5102
Funder(s):
Next Generation EU
© 2024 Stoler-Barak et al.
2024
Stoler-Barak et al.
This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms/). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 4.0 International license, as described at https://creativecommons.org/licenses/by-nc-sa/4.0/).
J Exp Med (2024) 221 (11): e20240433.
Article history
Received:
March 08 2024
Revision Received:
June 19 2024
Accepted:
August 15 2024
Citation
Liat Stoler-Barak, Dominik Schmiedel, Avital Sarusi-Portuguez, Adi Rogel, Ronnie Blecher-Gonen, Zhana Haimon, Tomas Stopka, Ziv Shulman; SMARCA5-mediated chromatin remodeling is required for germinal center formation. J Exp Med 4 November 2024; 221 (11): e20240433. doi: https://doi.org/10.1084/jem.20240433
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