The hallmark of tuberculosis (TB) is the formation of immune cell-enriched aggregates called granulomas. While granulomas are pathologically diverse, their tissue-wide heterogeneity has not been spatially resolved at the single-cell level in human tissues. By spatially mapping individual immune cells in every lesion across entire tissue sections, we report that in addition to necrotizing granulomas, the human TB lung contains abundant non-necrotizing leukocyte aggregates surrounding areas of necrotizing tissue. These cellular lesions were more diverse in composition than necrotizing lesions and could be stratified into four general classes based on cellular composition and spatial distribution of B cells and macrophages. The cellular composition of non-necrotizing structures also correlates with their proximity to necrotizing lesions, indicating these are foci of distinct immune reactions adjacent to necrotizing granulomas. Together, we show that during TB, diseased lung tissue develops a histopathological superstructure comprising at least four different types of non-necrotizing cellular aggregates organized as satellites of necrotizing granulomas.
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March 15 2023
Spatial mapping reveals granuloma diversity and histopathological superstructure in human tuberculosis
Andrew J. Sawyer
,
Andrew J. Sawyer
(Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing - original draft, Writing - review & editing)
1
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney
, Sydney, Australia
2
Centenary Institute, The University of Sydney
, Sydney, Australia
3
Charles Perkins Centre, The University of Sydney
, Sydney, Australia
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Ellis Patrick
,
Ellis Patrick
(Conceptualization, Investigation, Methodology, Writing - review & editing)
4
School of Mathematics and Statistics, Faculty of Science, The University of Sydney
, Sydney, Australia
5
Centre for Cancer Research, Westmead Institute for Medical Research, The University of Sydney
, Westmead, Australia
6
Sydney Precision Data Science Centre, The University of Sydney
, Sydney, Australia
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Jarem Edwards
,
Jarem Edwards
(Investigation, Supervision, Writing - review & editing)
1
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney
, Sydney, Australia
7
Melanoma Institute Australia, The University of Sydney
, Sydney, Australia
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James S. Wilmott
,
James S. Wilmott
(Resources, Software, Visualization, Writing - original draft)
1
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney
, Sydney, Australia
3
Charles Perkins Centre, The University of Sydney
, Sydney, Australia
7
Melanoma Institute Australia, The University of Sydney
, Sydney, Australia
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Timothy Fielder
,
Timothy Fielder
(Formal analysis, Visualization, Writing - review & editing)
8
Department of Tissue Pathology and Diagnostic Oncology, Royal Prince Alfred Hospital
, Camperdown, Australia
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Qianting Yang
,
Qianting Yang
(Resources)
9
Guangdong Key Lab for Diagnosis and Treatment of Emerging Infectious Diseases, Shenzhen, Third People’s Hospital, Shenzhen
, Shenzhen, China
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Daniel L. Barber
,
Daniel L. Barber
(Writing - original draft, Writing - review & editing)
10
Laboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases
, National Institutes of Health
, Bethesda, MD, USA
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Joel D. Ernst
,
Joel D. Ernst
(Funding acquisition, Visualization, Writing - original draft, Writing - review & editing)
11
Division of Experimental Medicine, Department of Medicine, University of California San Francisco
, San Francisco, CA, USA
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Warwick J. Britton
,
Warwick J. Britton
(Conceptualization, Project administration, Supervision, Writing - original draft, Writing - review & editing)
2
Centenary Institute, The University of Sydney
, Sydney, Australia
12
Department of Clinical Immunology, Royal Prince Alfred Hospital
, Camperdown, Australia
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Umaimainthan Palendira
,
Umaimainthan Palendira
(Methodology, Writing - review & editing)
1
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney
, Sydney, Australia
2
Centenary Institute, The University of Sydney
, Sydney, Australia
3
Charles Perkins Centre, The University of Sydney
, Sydney, Australia
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Xinchun Chen
,
13
Guangdong Key Laboratory of Regional Immunity and Diseases, Department of Pathogen Biology, Shenzhen University
School of Medicine
, Shenzhen, China
Xinchun Chen: chenxinchun@szu.edu.cn
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Carl G. Feng
(Conceptualization, Data curation, Funding acquisition, Project administration, Resources, Supervision, Writing - original draft, Writing - review & editing)
1
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney
, Sydney, Australia
2
Centenary Institute, The University of Sydney
, Sydney, Australia
3
Charles Perkins Centre, The University of Sydney
, Sydney, Australia
14
Institute for Infectious Diseases, The University of Sydney
, Sydney, Australia
Correspondence to Carl G Feng: carl.feng@sydney.edu.au
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Andrew J. Sawyer
Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing - original draft, Writing - review & editing
1
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney
, Sydney, Australia
2
Centenary Institute, The University of Sydney
, Sydney, Australia
3
Charles Perkins Centre, The University of Sydney
, Sydney, Australia
Ellis Patrick
Conceptualization, Investigation, Methodology, Writing - review & editing
4
School of Mathematics and Statistics, Faculty of Science, The University of Sydney
, Sydney, Australia
5
Centre for Cancer Research, Westmead Institute for Medical Research, The University of Sydney
, Westmead, Australia
6
Sydney Precision Data Science Centre, The University of Sydney
, Sydney, Australia
Jarem Edwards
Investigation, Supervision, Writing - review & editing
1
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney
, Sydney, Australia
7
Melanoma Institute Australia, The University of Sydney
, Sydney, Australia
James S. Wilmott
Resources, Software, Visualization, Writing - original draft
1
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney
, Sydney, Australia
3
Charles Perkins Centre, The University of Sydney
, Sydney, Australia
7
Melanoma Institute Australia, The University of Sydney
, Sydney, Australia
Timothy Fielder
Formal analysis, Visualization, Writing - review & editing
8
Department of Tissue Pathology and Diagnostic Oncology, Royal Prince Alfred Hospital
, Camperdown, Australia
Qianting Yang
Resources
9
Guangdong Key Lab for Diagnosis and Treatment of Emerging Infectious Diseases, Shenzhen, Third People’s Hospital, Shenzhen
, Shenzhen, China
Daniel L. Barber
Writing - original draft, Writing - review & editing
10
Laboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases
, National Institutes of Health
, Bethesda, MD, USA
Joel D. Ernst
Funding acquisition, Visualization, Writing - original draft, Writing - review & editing
11
Division of Experimental Medicine, Department of Medicine, University of California San Francisco
, San Francisco, CA, USA
Warwick J. Britton
Conceptualization, Project administration, Supervision, Writing - original draft, Writing - review & editing
2
Centenary Institute, The University of Sydney
, Sydney, Australia
12
Department of Clinical Immunology, Royal Prince Alfred Hospital
, Camperdown, Australia
Umaimainthan Palendira
Methodology, Writing - review & editing
1
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney
, Sydney, Australia
2
Centenary Institute, The University of Sydney
, Sydney, Australia
3
Charles Perkins Centre, The University of Sydney
, Sydney, Australia
13
Guangdong Key Laboratory of Regional Immunity and Diseases, Department of Pathogen Biology, Shenzhen University
School of Medicine
, Shenzhen, China
Carl G. Feng
Conceptualization, Data curation, Funding acquisition, Project administration, Resources, Supervision, Writing - original draft, Writing - review & editing
1
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney
, Sydney, Australia
2
Centenary Institute, The University of Sydney
, Sydney, Australia
3
Charles Perkins Centre, The University of Sydney
, Sydney, Australia
14
Institute for Infectious Diseases, The University of Sydney
, Sydney, Australia
Correspondence to Carl G Feng: carl.feng@sydney.edu.au
Xinchun Chen: chenxinchun@szu.edu.cn
Disclosures: J. Edwards reported being currently employed by Bristol Myers Squibb, but was not employed at the time the data was generated and analyzed. No other disclosures were reported.
Received:
August 15 2022
Revision Received:
January 07 2023
Accepted:
February 28 2023
Online ISSN: 1540-9538
Print ISSN: 0022-1007
Funding
Funder(s):
National Institutes of Health
- Award Id(s): U01AI166309
Funder(s):
Natural Science Foundation of China
- Award Id(s): 91942315
Funder(s):
Australian Postgraduate Awards
© 2023 Sawyer et al.
2023
Sawyer et al.
This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms/). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 4.0 International license, as described at https://creativecommons.org/licenses/by-nc-sa/4.0/).
J Exp Med (2023) 220 (6): e20221392.
Article history
Received:
August 15 2022
Revision Received:
January 07 2023
Accepted:
February 28 2023
Citation
Andrew J. Sawyer, Ellis Patrick, Jarem Edwards, James S. Wilmott, Timothy Fielder, Qianting Yang, Daniel L. Barber, Joel D. Ernst, Warwick J. Britton, Umaimainthan Palendira, Xinchun Chen, Carl G. Feng; Spatial mapping reveals granuloma diversity and histopathological superstructure in human tuberculosis. J Exp Med 5 June 2023; 220 (6): e20221392. doi: https://doi.org/10.1084/jem.20221392
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