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Journal Articles

Somatic polyploidy supports biosynthesis and tissue function by increasing transcriptional output

Alexander T. Lessenger, Jan M. Skotheim, Mathew P. Swaffer, Jessica L. Feldman
Journal: Journal of Cell Biology
J Cell Biol (2024) 224 (3): e202403154.
https://doi.org/10.1083/jcb.202403154
Published: 09 December 2024
View article titled, Somatic polyploidy supports biosynthesis and tissue function by increasing transcriptional output
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Includes: Supplementary data
Journal Articles

Feedback control of the heat shock response by spatiotemporal regulation of Hsp70

Rania Garde, Annisa Dea, Madeline F. Herwig, Asif Ali, David Pincus
Journal: Journal of Cell Biology
J Cell Biol (2024) 223 (12): e202401082.
https://doi.org/10.1083/jcb.202401082
Published: 20 September 2024
View article titled, Feedback control of the heat shock response by spatiotemporal regulation of Hsp70
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Includes: Supplementary data
Journal Articles

Arp2/3-dependent endocytosis ensures Cdc42 oscillations by removing Pak1-mediated negative feedback

Marcus A. Harrell, Ziyi Liu, Bethany F. Campbell, Olivia Chinsen, Tian Hong, Maitreyi Das
Journal: Journal of Cell Biology
J Cell Biol (2024) 223 (10): e202311139.
https://doi.org/10.1083/jcb.202311139
Published: 16 July 2024
View article titled, Arp2/3-dependent endocytosis ensures Cdc42 oscillations by removing Pak1-mediated negative feedback
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Includes: Supplementary data
Journal Articles

AI analysis of super-resolution microscopy: Biological discovery in the absence of ground truth

Ivan R. Nabi, Ben Cardoen, Ismail M. Khater, Guang Gao, Timothy H. Wong, Ghassan Hamarneh
Journal: Journal of Cell Biology
J Cell Biol (2024) 223 (8): e202311073.
https://doi.org/10.1083/jcb.202311073
Published: 12 June 2024
View article titled, AI analysis of super-resolution microscopy: Biological discovery in the absence of ground truth
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Journal Articles

Bridging condensins mediate compaction of mitotic chromosomes

Giada Forte, Lora Boteva, Filippo Conforto, Nick Gilbert, Peter R. Cook, Davide Marenduzzo
Journal: Journal of Cell Biology
J Cell Biol (2023) 223 (1): e202209113.
https://doi.org/10.1083/jcb.202209113
Published: 17 November 2023
View article titled, Bridging condensins mediate compaction of mitotic chromosomes
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Journal Articles

Membrane contact site detection (MCS-DETECT) reveals dual control of rough mitochondria–ER contacts

In Special Collection:
Inter-Organelle Contacts , Structural Biology 2024 , Tools Collection 2024
Ben Cardoen, Kurt R. Vandevoorde, Guang Gao, Milene Ortiz-Silva, Parsa Alan, William Liu, Ellie Tiliakou, A. Wayne Vogl, Ghassan Hamarneh, Ivan R. Nabi
Journal: Journal of Cell Biology
J Cell Biol (2023) 223 (1): e202206109.
https://doi.org/10.1083/jcb.202206109
Published: 10 November 2023
View article titled, Membrane contact site detection (MCS-DETECT) reveals dual control of rough mitochondria–ER contacts
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Includes: Supplementary data
Journal Articles

Automatic detection of spatio-temporal signaling patterns in cell collectives

Paolo Armando Gagliardi, Benjamin Grädel, Marc-Antoine Jacques, Lucien Hinderling, Pascal Ender, Andrew R. Cohen, Gerald Kastberger, Olivier Pertz, Maciej Dobrzyński
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (10): e202207048.
https://doi.org/10.1083/jcb.202207048
Published: 27 July 2023
View article titled, Automatic detection of spatio-temporal signaling patterns in cell collectives
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Journal Articles

FREEDA: An automated computational pipeline guides experimental testing of protein innovation

In Special Collection:
Structural Biology 2024
Damian Dudka, R. Brian Akins, Michael A. Lampson
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (9): e202212084.
https://doi.org/10.1083/jcb.202212084
Published: 26 June 2023
View article titled, FREEDA: An automated computational pipeline guides experimental testing of protein innovation
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Includes: Supplementary data
Journal Articles

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin

Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (9): e202207060.
https://doi.org/10.1083/jcb.202207060
Published: 26 June 2023
View article titled, Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin
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Includes: Supplementary data
Journal Articles

Oncogenic signaling is coupled to colorectal cancer cell differentiation state

In Special Collection:
Cancer Cell Biology 2024
Thomas Sell, Christian Klotz, Matthias M. Fischer, Rosario Astaburuaga-García, Susanne Krug, Jarno Drost, Hans Clevers, Christine Sers, Markus Morkel, Nils Blüthgen
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (6): e202204001.
https://doi.org/10.1083/jcb.202204001
Published: 05 April 2023
View article titled, Oncogenic signaling is coupled to colorectal cancer cell differentiation state
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Journal Articles

Deep learning techniques and mathematical modeling allow 3D analysis of mitotic spindle dynamics

In Special Collection:
Tools Collection 2024
David Dang, Christoforos Efstathiou, Dijue Sun, Haoran Yue, Nishanth R. Sastry, Viji M. Draviam
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (5): e202111094.
https://doi.org/10.1083/jcb.202111094
Published: 02 March 2023
View article titled, Deep learning techniques and mathematical modeling allow 3D analysis of mitotic spindle dynamics
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Includes: Supplementary data
Journal Articles

Quantifying organellar ultrastructure in cryo-electron tomography using a surface morphometrics pipeline

In Special Collection:
Structural Biology 2023
Benjamin A. Barad, Michaela Medina, Daniel Fuentes, R. Luke Wiseman, Danielle A. Grotjahn
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (4): e202204093.
https://doi.org/10.1083/jcb.202204093
Published: 14 February 2023
View article titled, Quantifying organellar ultrastructure in cryo-electron tomography using a surface morphometrics pipeline
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Includes: Supplementary data
Journal Articles

Semi-automated 3D fluorescence speckle analyzer (3D-Speckler) for microscope calibration and nanoscale measurement

Jonathan Loi, Xiaofei Qu, Aussie Suzuki
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (4): e202202078.
https://doi.org/10.1083/jcb.202202078
Published: 30 January 2023
View article titled, Semi-automated 3D fluorescence speckle analyzer (3D-Speckler) for microscope calibration and nanoscale measurement
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Includes: Supplementary data
Journal Articles

ILEE: Algorithms and toolbox for unguided and accurate quantitative analysis of cytoskeletal images

Pai Li, Ze Zhang, Yiying Tong, Bardees M. Foda, Brad Day
Journal: Journal of Cell Biology
J Cell Biol (2022) 222 (2): e202203024.
https://doi.org/10.1083/jcb.202203024
Published: 19 December 2022
View article titled, ILEE: Algorithms and toolbox for unguided and accurate quantitative analysis of cytoskeletal images
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Journal Articles

Regulation of the COPII secretory machinery via focal adhesions and extracellular matrix signaling

Juan Jung, Muzamil Majid Khan, Jonathan Landry, Aliaksandr Halavatyi, Pedro Machado, Miriam Reiss, Rainer Pepperkok
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (8): e202110081.
https://doi.org/10.1083/jcb.202110081
Published: 13 July 2022
View article titled, Regulation of the COPII secretory machinery via focal adhesions and extracellular matrix signaling
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Includes: Supplementary data
Journal Articles

A two-step search and run response to gradients shapes leukocyte navigation in vivo

In Special Collection:
Immune Cell Biology 2023
Antonios Georgantzoglou, Hugo Poplimont, Hazel A. Walker, Tim Lämmermann, Milka Sarris
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (8): e202103207.
https://doi.org/10.1083/jcb.202103207
Published: 22 June 2022
View article titled, A two-step search and run response to gradients shapes leukocyte navigation in vivo
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Journal Articles

Analysis of conditional colocalization relationships and hierarchies in three-color microscopy images

Jesus Vega-Lugo, Bruno da Rocha-Azevedo, Aparajita Dasgupta, Khuloud Jaqaman
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (7): e202106129.
https://doi.org/10.1083/jcb.202106129
Published: 13 May 2022
View article titled, Analysis of conditional colocalization relationships and hierarchies in three-color microscopy images
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Journal Articles

A lysosomal biogenesis map reveals the cargo spectrum of yeast vacuolar protein targeting pathways

In Special Collection:
Tools Collection 2023
Sebastian Eising, Bianca Esch, Mike Wälte, Prado Vargas Duarte, Stefan Walter, Christian Ungermann, Maria Bohnert, Florian Fröhlich
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (4): e202107148.
https://doi.org/10.1083/jcb.202107148
Published: 17 February 2022
View article titled, A lysosomal biogenesis map reveals the cargo spectrum of yeast vacuolar protein targeting pathways
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Includes: Supplementary data
Journal Articles

Chromosome compartmentalization alterations in prostate cancer cell lines model disease progression

In Special Collection:
Chromatin Biology 2022
Rebeca San Martin, Priyojit Das, Renata Dos Reis Marques, Yang Xu, Justin M. Roberts, Jacob T. Sanders, Rosela Golloshi, Rachel Patton McCord
Journal: Journal of Cell Biology
J Cell Biol (2021) 221 (2): e202104108.
https://doi.org/10.1083/jcb.202104108
Published: 10 December 2021
View article titled, Chromosome compartmentalization alterations in prostate cancer cell lines model disease progression
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Includes: Supplementary data
Journal Articles

Volumetric morphometry reveals spindle width as the best predictor of mammalian spindle scaling

In Special Collection:
Tools Collection 2023
Tobias Kletter, Sebastian Reusch, Tommaso Cavazza, Nils Dempewolf, Christian Tischer, Simone Reber
Journal: Journal of Cell Biology
J Cell Biol (2021) 221 (1): e202106170.
https://doi.org/10.1083/jcb.202106170
Published: 17 November 2021
View article titled, Volumetric morphometry reveals spindle width as the best predictor of mammalian spindle scaling
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