Dolichol-linked oligosaccharide (DLO) is the precursor for asparagine (N)-linked protein glycosylation. DLO synthesis can be impaired by genetic and environmental factors, leading to the accumulation of various immature DLO intermediates that are subsequently cleaved into phosphorylated oligosaccharides (POSs). Despite the fact that its activity has been known since the 1970s, the identity of the enzyme has not been clarified. Here, we identified a Saccharomyces cerevisiae gene encoding a DLO-pyrophosphatase (Llp1), which converts DLO to POSs. Intriguingly, LLP1 mRNA was translated through a programmed +1 translational frameshifting. LLP1 orthologs encode members of VanZ family proteins, which are found in various bacteria and fungi. Llp1 and its substrate DLO are likely to be localized in the Golgi, and when LLP1 was knocked out, abnormal DLO modified by Golgi mannosyltransferases accumulated, which is consistent with a role in DLO homeostasis/quality control. This study provides insights into how the cellular levels and quality of DLOs are maintained in eukaryotes.
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3 November 2025
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September 29 2025
LLP1 is a pyrophosphatase involved in homeostasis/quality control of dolichol-linked oligosaccharide
Sheng-Tao Li
,
Sheng-Tao Li
(Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing)
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
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Katsuhiko Kamada
,
Katsuhiko Kamada
(Data curation, Formal analysis, Methodology, Resources, Validation, Visualization, Writing - review & editing)
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
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Akinobu Honda
,
Akinobu Honda
(Investigation, Writing - review & editing)
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
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Junichi Seino
,
Junichi Seino
(Investigation)
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
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Tsugiyo Matsuda
,
Tsugiyo Matsuda
(Investigation)
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
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Takehiro Suzuki
,
Takehiro Suzuki
(Investigation)
2Biomolecular Characterization Unit,
RIKEN Center for Sustainable Resource Science
, Saitama, Japan
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Naoshi Dohmae
,
Naoshi Dohmae
(Investigation)
2Biomolecular Characterization Unit,
RIKEN Center for Sustainable Resource Science
, Saitama, Japan
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Yuichi Shichino
,
Yuichi Shichino
(Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Visualization, Writing - review & editing)
3RNA Systems Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
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Shintaro Iwasaki
,
Shintaro Iwasaki
(Funding acquisition, Supervision, Writing - review & editing)
3RNA Systems Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
4Department of Computational Biology and Medical Sciences,
Graduate School of Frontier Sciences, The University of Tokyo
, Kashiwa, Japan
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Yoichi Noda
,
Yoichi Noda
(Investigation)
5Department of Biotechnology, Graduate School of Agricultural and Life Sciences and Collaborative Research Institute for Innovative Microbiology,
The University of Tokyo
, Tokyo, Japan
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Michael Costanzo
,
Michael Costanzo
(Investigation)
6
Donnelly Center for Cellular and Biomolecular Research, University of Toronto
, Toronto, Canada
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Charles Boone
,
Charles Boone
(Investigation, Writing - review & editing)
6
Donnelly Center for Cellular and Biomolecular Research, University of Toronto
, Toronto, Canada
7Department of Molecular Genetics,
University of Toronto
, Toronto, Canada
8
Molecular Ligand Target Research Team, RIKEN Centre for Sustainable Resource Science
, Wako, Japan
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Tadashi Suzuki
(Conceptualization, Data curation, Funding acquisition, Project administration, Resources, Supervision, Visualization, Writing - review & editing)
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
Correspondence to Tadashi Suzuki: [email protected]
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Sheng-Tao Li
https://orcid.org/0000-0003-4897-6734
Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
Katsuhiko Kamada
https://orcid.org/0000-0001-8523-3417
Data curation, Formal analysis, Methodology, Resources, Validation, Visualization, Writing - review & editing
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
Akinobu Honda
https://orcid.org/0009-0005-7137-8646
Investigation, Writing - review & editing
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
Junichi Seino
https://orcid.org/0009-0003-6418-1250
Investigation
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
Tsugiyo Matsuda
https://orcid.org/0009-0000-4597-0690
Investigation
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
Takehiro Suzuki
https://orcid.org/0000-0002-0585-6305
Investigation
2Biomolecular Characterization Unit,
RIKEN Center for Sustainable Resource Science
, Saitama, Japan
Naoshi Dohmae
https://orcid.org/0000-0002-5242-9410
Investigation
2Biomolecular Characterization Unit,
RIKEN Center for Sustainable Resource Science
, Saitama, Japan
Yuichi Shichino
https://orcid.org/0000-0002-0093-1185
Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Visualization, Writing - review & editing
3RNA Systems Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
Shintaro Iwasaki
https://orcid.org/0000-0001-7724-3754
Funding acquisition, Supervision, Writing - review & editing
3RNA Systems Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
4Department of Computational Biology and Medical Sciences,
Graduate School of Frontier Sciences, The University of Tokyo
, Kashiwa, Japan
Yoichi Noda
https://orcid.org/0009-0004-8200-6277
Investigation
5Department of Biotechnology, Graduate School of Agricultural and Life Sciences and Collaborative Research Institute for Innovative Microbiology,
The University of Tokyo
, Tokyo, Japan
Michael Costanzo
https://orcid.org/0000-0002-7906-2604
Investigation
6
Donnelly Center for Cellular and Biomolecular Research, University of Toronto
, Toronto, Canada
Charles Boone
https://orcid.org/0000-0002-3542-6760
Investigation, Writing - review & editing
6
Donnelly Center for Cellular and Biomolecular Research, University of Toronto
, Toronto, Canada
7Department of Molecular Genetics,
University of Toronto
, Toronto, Canada
8
Molecular Ligand Target Research Team, RIKEN Centre for Sustainable Resource Science
, Wako, Japan
Tadashi Suzuki
https://orcid.org/0000-0003-1030-7631
Conceptualization, Data curation, Funding acquisition, Project administration, Resources, Supervision, Visualization, Writing - review & editing
1Glycometabolic Biochemistry Laboratory,
RIKEN Pioneering Research Institute (PRI), RIKEN
, Saitama, Japan
Correspondence to Tadashi Suzuki: [email protected]
Disclosures: The authors declare no competing interests exist.
Received:
January 29 2025
Revision Received:
July 04 2025
Accepted:
August 14 2025
Online ISSN: 1540-8140
Print ISSN: 0021-9525
Funding
Funder(s):
RIKEN
Funder(s):
Japan Agency for Medical Research and Development
Funder(s):
Core Research for Evolutional Science and Technology
- Award Id(s): JP23gm1410004,JP23gm1410001
Funder(s):
KAKENHI
- Award Id(s): JP18H03990,JP 24H02307
Funder(s):
Ministry of Education, Culture, Sports, Science and Technology
© 2025 Crown copyright. The government of Australia, Canada, or the UK (“the Crown”) owns the copyright interests of authors who are government employees. The Crown Copyright is not transferable.
2025
Crown copyright. The government of Australia, Canada, or the UK (“the Crown”) owns the copyright interests of authors who are government employees. The Crown Copyright is not transferable.
This article is distributed under the terms as described at https://rupress.org/pages/terms102024/.
J Cell Biol (2025) 224 (11): e202501239.
Article history
Received:
January 29 2025
Revision Received:
July 04 2025
Accepted:
August 14 2025
Connected Content
Citation
Sheng-Tao Li, Katsuhiko Kamada, Akinobu Honda, Junichi Seino, Tsugiyo Matsuda, Takehiro Suzuki, Naoshi Dohmae, Yuichi Shichino, Shintaro Iwasaki, Yoichi Noda, Michael Costanzo, Charles Boone, Tadashi Suzuki; LLP1 is a pyrophosphatase involved in homeostasis/quality control of dolichol-linked oligosaccharide. J Cell Biol 3 November 2025; 224 (11): e202501239. doi: https://doi.org/10.1083/jcb.202501239
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