Current models posit that nuclear speckles (NSs) serve as reservoirs of splicing factors and facilitate posttranscriptional mRNA processing. Here, we discovered that ribotoxic stress induces a profound reorganization of NSs with enhanced recruitment of factors required for splice-site recognition, including the RNA-binding protein TIAR, U1 snRNP proteins and U2-associated factor 65, as well as serine 2 phosphorylated RNA polymerase II. NS reorganization relies on the stress-activated p38 mitogen-activated protein kinase (MAPK) pathway and coincides with splicing activation of both pre-existing and newly synthesized pre-mRNAs. In particular, ribotoxic stress causes targeted excision of retained introns from pre-mRNAs of immediate early genes (IEGs), whose transcription is induced during the stress response. Importantly, enhanced splicing of the IEGs ZFP36 and FOS is accompanied by relocalization of the corresponding nuclear mRNA foci to NSs. Our study reveals NSs as a dynamic compartment that is remodeled under stress conditions, whereby NSs appear to become sites of IEG transcription and efficient cotranscriptional splicing.
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4 December 2023
Article|
November 13 2023
Stress-induced nuclear speckle reorganization is linked to activation of immediate early gene splicing
Hsu-Min Sung
,
Hsu-Min Sung
(Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing)
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
3VIB-VUB Center for Structural Biology,
VIB
, Brussels, Belgium
4
Brussels Center for Redox Biology
, Brussels, Belgium
5Structural Biology Brussels,
Vrije Universiteit Brussel
, Brussels, Belgium
6Molecular Physiology, Institute of Cardiovascular Physiology, University Medical Center,
Georg-August-University
, Göttingen, Germany
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Johanna Schott
,
Johanna Schott
*
(Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing - review & editing)
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
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Philipp Boss
,
Philipp Boss
*
(Formal analysis, Methodology, Software, Visualization, Writing - review & editing)
7Berlin Institute for Medical Systems Biology,
Max-Delbrück-Center for Molecular Medicine
, Berlin, Germany
8Department of Biology,
Humboldt University
, Berlin, Germany
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Janina A. Lehmann
,
Janina A. Lehmann
(Investigation, Writing - review & editing)
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
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Marius Roland Hardt
,
Marius Roland Hardt
(Investigation)
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
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Doris Lindner
,
Doris Lindner
(Investigation, Methodology)
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
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Joris Messens
,
Joris Messens
(Funding acquisition, Resources, Supervision, Writing - review & editing)
3VIB-VUB Center for Structural Biology,
VIB
, Brussels, Belgium
4
Brussels Center for Redox Biology
, Brussels, Belgium
5Structural Biology Brussels,
Vrije Universiteit Brussel
, Brussels, Belgium
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Ivan Bogeski
,
Ivan Bogeski
(Funding acquisition, Resources, Supervision, Writing - review & editing)
6Molecular Physiology, Institute of Cardiovascular Physiology, University Medical Center,
Georg-August-University
, Göttingen, Germany
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Uwe Ohler
,
Uwe Ohler
(Conceptualization, Funding acquisition, Supervision, Writing - review & editing)
7Berlin Institute for Medical Systems Biology,
Max-Delbrück-Center for Molecular Medicine
, Berlin, Germany
8Department of Biology,
Humboldt University
, Berlin, Germany
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Georg Stoecklin
(Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing)
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
Correspondence to Georg Stoecklin: georg.stoecklin@medma.uni-heidelberg.de
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Hsu-Min Sung
Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
3VIB-VUB Center for Structural Biology,
VIB
, Brussels, Belgium
4
Brussels Center for Redox Biology
, Brussels, Belgium
5Structural Biology Brussels,
Vrije Universiteit Brussel
, Brussels, Belgium
6Molecular Physiology, Institute of Cardiovascular Physiology, University Medical Center,
Georg-August-University
, Göttingen, Germany
Johanna Schott
Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing - review & editing
*
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
Philipp Boss
Formal analysis, Methodology, Software, Visualization, Writing - review & editing
*
7Berlin Institute for Medical Systems Biology,
Max-Delbrück-Center for Molecular Medicine
, Berlin, Germany
8Department of Biology,
Humboldt University
, Berlin, Germany
Janina A. Lehmann
Investigation, Writing - review & editing
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
Marius Roland Hardt
Investigation
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
Doris Lindner
Investigation, Methodology
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
Joris Messens
Funding acquisition, Resources, Supervision, Writing - review & editing
3VIB-VUB Center for Structural Biology,
VIB
, Brussels, Belgium
4
Brussels Center for Redox Biology
, Brussels, Belgium
5Structural Biology Brussels,
Vrije Universiteit Brussel
, Brussels, Belgium
Ivan Bogeski
Funding acquisition, Resources, Supervision, Writing - review & editing
6Molecular Physiology, Institute of Cardiovascular Physiology, University Medical Center,
Georg-August-University
, Göttingen, Germany
Uwe Ohler
Conceptualization, Funding acquisition, Supervision, Writing - review & editing
7Berlin Institute for Medical Systems Biology,
Max-Delbrück-Center for Molecular Medicine
, Berlin, Germany
8Department of Biology,
Humboldt University
, Berlin, Germany
Georg Stoecklin
Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing
1Mannheim Institute for Innate Immunoscience (MI3) and Mannheim Cancer Center (MCC), Medical Faculty Mannheim,
Heidelberg University
, Mannheim, Germany
2
Center for Molecular Biology of Heidelberg University (ZMBH), German Cancer Research Center (DKFZ)-ZMBH Alliance
, Heidelberg, Germany
Correspondence to Georg Stoecklin: georg.stoecklin@medma.uni-heidelberg.de
*
J. Schott and P. Boss contributed equally to this paper.
Disclosures: The authors declare no competing interests exist.
Received:
November 30 2021
Revision Received:
July 13 2023
Accepted:
September 29 2023
Online ISSN: 1540-8140
Print ISSN: 0021-9525
Funding
Funder(s):
Heidelberg Biosciences International Graduate School
Funder(s):
Vrije Universiteit Brussel
- Award Id(s): SRP34
Funder(s):
Deutsche Forschungsgemeinschaft
- Award Id(s): TRR 186,TRR 319,GRK 2727,SFB 1190,SPP 1935
Funder(s):
German national bioinformatics infrastructure
Funder(s):
Bundesministerium für Bildung und Forschung
© 2023 Sung et al.
2023
Sung et al.
This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms/). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 4.0 International license, as described at https://creativecommons.org/licenses/by-nc-sa/4.0/).
J Cell Biol (2023) 222 (12): e202111151.
Article history
Received:
November 30 2021
Revision Received:
July 13 2023
Accepted:
September 29 2023
Connected Content
Citation
Hsu-Min Sung, Johanna Schott, Philipp Boss, Janina A. Lehmann, Marius Roland Hardt, Doris Lindner, Joris Messens, Ivan Bogeski, Uwe Ohler, Georg Stoecklin; Stress-induced nuclear speckle reorganization is linked to activation of immediate early gene splicing. J Cell Biol 4 December 2023; 222 (12): e202111151. doi: https://doi.org/10.1083/jcb.202111151
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